NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0348335_027107

Scaffold Ga0348335_027107


Overview

Basic Information
Taxon OID3300034374 Open in IMG/M
Scaffold IDGa0348335_027107 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2601
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.124826Long. (o)-75.260873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009459Metagenome317Y
F022875Metagenome212N
F074734Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0348335_027107_2138_2341F009459GGAMSREITLEASVMIEELMFYIHQNEMSGDAIDPANRFFPLYLELQKLLDHEQQKKYDLYVSVKNDETK
Ga0348335_027107_2341_2595F022875N/AMKLNLTEEIKENIRVRAKAHINSTDPSTDYWDSIETPDGFVDFNIWQDDDYRGGEWIVTCYDTYCSTDDGCVHTDTSTFKRIAL
Ga0348335_027107_3_569F074734AGAAGVNAIEAEMKRWGRATYRQFQQFYKESERGSELDSSKRVLSKLAPQLADPIEDFFNRFVSDDSPSMPIWLCYIADFHPQMVAQIALKTVLDKMYAETRHFSRLAAEVGKAFEEVARQRVAEHTVAKNKMFSVQKTKSKRSKMQRFYNVEKNNRRFTCWEKRLKVSLGAWLLGEIERHTGLIEFRMERFGK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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