NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0348336_005651

Scaffold Ga0348336_005651


Overview

Basic Information
Taxon OID3300034375 Open in IMG/M
Scaffold IDGa0348336_005651 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8601
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.130153Long. (o)-75.249887Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018355Metagenome / Metatranscriptome235N
F104773Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0348336_005651_2346_2513F018355N/AMKVTIQKACKLRGNNWKKGDTPTVTTAFAEELKKKGYLDAPKKKTDEESNDITKE
Ga0348336_005651_2542_2904F104773AGCAGMKIFKTVALFALAIVAVPIGFVYGIAVAIAHVITYPRTAGRELYEAFRQLSKIVSVMAAEMLNAVLIHKSGIPFGTHTVSATLGANYRESTLKPLGEWLRATLDSIEARHCTTAAERAGI

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