Scaffold Ga0348336_011715

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0348336_011715

Scaffold Ga0348336_011715

Overview

Basic Information
Taxon OID	3300034375 Open in IMG/M
Scaffold ID	Ga0348336_011715 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5184
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.130153	Long. (^o)	-75.249887	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020903	Metagenome / Metatranscriptome	221	N
F029278	Metagenome / Metatranscriptome	189	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0348336_011715_2_538	F020903	N/A	MSQQLDIFGFDADQLEEVKIDNPTTLSQVFNNIAADMVYCLQQSVRKEGLVYKGNLEQSIKMPVKMFGFRMVATLYLADYYDYLNQGVKGIGGTRKYKKGVKLKIPEPWVIKAPNSPYQFKKGPSVSHVRQWAKSKGLNEYAVRNSIARTGIRPRYFFDNCMQETFYGEAFNKFKTDIR
Ga0348336_011715_687_1331	F029278	N/A	MEITIPTKWEDVTIGNYINLRPVLNSKLNPIERVINILAVLTGQKRDVIKNISLKQFKSIKKKMGFLETELPKQLKDKRFKIGGQWYEFKVDAKKLLFGEYINSMEILQNAKDDEEAIFNNLHHILTTICRPVKKTLFGWKHIDVNSEILRKTADNFLNNMPMTIAYPIGVFFYTHSEDLTKAIKTCLMEEAEKMTKEAREELDLVSVGDGGTP

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