NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0348336_026172

Scaffold Ga0348336_026172


Overview

Basic Information
Taxon OID3300034375 Open in IMG/M
Scaffold IDGa0348336_026172 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2861
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.130153Long. (o)-75.249887Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028155Metagenome192N
F065736Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0348336_026172_1_657F065736GGGGGLKPAAIPQKAGVVVEIVSEIPEGDYDQHQAKLLTVQGGSWQETGATVPVRHVGESAVPAETRVIVEPCGRLGLCFARTDNGRPEVLHSLGRFLRPVEQVAGYFGDEDTNWAFAIGPDIVTDNWNPQLPTWLQSGSTEPNWHAEATRTGTPTVTDSGNGWTAEWRQHLYPLRFEMTGNSGPYMRHGVLYGNQADDTWWSPARHFLNLDLAWAQYDWAASA
Ga0348336_026172_2231_2842F028155N/AMIWKTAFLSTFSDAVTGVRRMWNSTQNWLSRGIIELMGMIDKSIDVDAVTAELDVMMREQDDRITREAEAERSQRQAAFEISMGKVNDDMAKARAEYEAAIAEARQKAGEVANEPSAAAVASDKFTEMIESLQAGDIATRVDQAVQQTGSQNLKTVQGASVLTRLINGQGELGRQQVQLLKQLRDVQKRMVTVTEKGLVAWEV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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