NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0348336_029397

Scaffold Ga0348336_029397


Overview

Basic Information
Taxon OID3300034375 Open in IMG/M
Scaffold IDGa0348336_029397 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2622
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.130153Long. (o)-75.249887Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017135Metagenome242N
F064230Metagenome129Y
F084080Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0348336_029397_1404_1649F017135GAGGMIPIINCPLPGGGQALIKTQDIGGATSGKNPKECDVYVIGWAANGITVDLSLDDFAEIWVSALFDEGSNDIEIIFTPDEVH
Ga0348336_029397_1609_1800F064230GAGGMTLKSYLPQMKCTECFKIMVPQFKKEYPHKLEGWSCDCGNSEKAILRERQYTREDNDSQARVV
Ga0348336_029397_1919_2158F084080GAGMSNATALCHACHRYFTSNPIAFHDWLNVELGEAHMDKLRQDRNEIYKTNKLLRKDIGDHYRDEVRRKEIDPDYEIQSWN
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