NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0348336_097693

Scaffold Ga0348336_097693


Overview

Basic Information
Taxon OID3300034375 Open in IMG/M
Scaffold IDGa0348336_097693 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1005
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.130153Long. (o)-75.249887Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001166Metagenome / Metatranscriptome760Y
F019641Metagenome / Metatranscriptome228N

Sequences

Protein IDFamilyRBSSequence
Ga0348336_097693_399_761F001166N/AMATEIGENVQVKANLAFMAKVIAVVGSVVWGYSVIWNKINELDNGLGRVQHEGTMLGDLSARMLHIEKFAEQSKGDLDHLMSLQDAPITSDHQQFERIKYLEKELDILRGKFDYFIYGVK
Ga0348336_097693_766_1005F019641GGAGMGELLMLFITGGGSTAMGAILKGVFGYVFEAKAQKHDLEMAREARASDNFLRLQAEIAKSGTGEFVSFTRRILAVIGVST
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