NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334931_042159

Scaffold Ga0334931_042159


Overview

Basic Information
Taxon OID3300034377 Open in IMG/M
Scaffold IDGa0334931_042159 Open in IMG/M
Source Dataset NameSub-biocrust soil microbial communities from Mojave Desert, California, United States - 27HNS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1005
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004335Metagenome / Metatranscriptome443Y
F005774Metagenome / Metatranscriptome390Y

Sequences

Protein IDFamilyRBSSequence
Ga0334931_042159_207_479F004335GGAGMAYICALATEHLEWALYAVSLLVGALPDEIPLLRMRGFGRRGFGFGRGRGSFRLFRILFVLLFTTALGPVVLVALVAFAAYGFFSSRRGR
Ga0334931_042159_556_750F005774GGAGGMNRDRLLRDLRWLAEGNPRYAGTHEEGEQNPAVARLMAEDLLLSYIGDGEVTQAFDEIRRGYAP

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