Scaffold Ga0325419_001564

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0325419_001564

Scaffold Ga0325419_001564

Overview

Basic Information
Taxon OID	3300034389 Open in IMG/M
Scaffold ID	Ga0325419_001564 Open in IMG/M
Source Dataset Name	Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-Control-R4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	25774
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (32.43%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	32.1348	Long. (^o)	-81.9657	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000510	Metagenome	1067	Y
F015553	Metagenome	253	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325419_001564_4349_4717	F015553	AGGAG	MRERYGDDPSTHPDFNPDLWMEVGSSDRPEKNQVYGLSNTTAENLQSARSVSTVGSSPSVSSTQSEEFMALKQQYERLSTNYDQLRQMVMEIRSRMGDVTCAAPFWLYGPENNQPPPAPPLF
Ga0325419_001564_644_853	F000510	N/A	MQFGGVWKLSRLKQKKTKNYQTKFNKIRKLSREQTLVTSTHPLTEIRTDHGNETSIYILNIYLFLTLVN

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