Scaffold Ga0374090_00315

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0374090_00315

Scaffold Ga0374090_00315

Overview

Basic Information
Taxon OID	3300034404 Open in IMG/M
Scaffold ID	Ga0374090_00315 Open in IMG/M
Source Dataset Name	Hot spring sediment microbial community from Evening Primrose, Yellowstone National Park, WY, USA - EP_sed
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Wisconsin, Madison
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	17947
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (86.21%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Acidilobaceae → Acidilobus → unclassified Acidilobus → Acidilobus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hot Spring Sediment → Evening Primrose Hot Spring Microbial Community

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.69934	Long. (^o)	-110.76721	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028973	Metagenome	190	Y
F032562	Metagenome	179	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0374090_00315_2286_2636	F032562	AGGAGG	VSEGKGSKVSLLSEDRINVLTYADTNHNTTRYFAEIEVNDRKTTSEKHESLDVFKDFERTVENLYRKAEVLKELSSPRAADALAEDMLNDIAELVLLTRALLDKTKSWRLWKSQEP
Ga0374090_00315_5149_5469	F028973	AGGTGG	VAQVTEEEEKRAQETVDEIVRELEEHHVNGDWDKFFDDEVLDVLLMVTPDKEDVLGFSILLGYGGPTIEFLCDRGDGKIIYSYGDVEVKKDVDPDICDDIINYLDS

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