Scaffold Ga0374090_01333

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0374090_01333

Scaffold Ga0374090_01333

Overview

Basic Information
Taxon OID	3300034404 Open in IMG/M
Scaffold ID	Ga0374090_01333 Open in IMG/M
Source Dataset Name	Hot spring sediment microbial community from Evening Primrose, Yellowstone National Park, WY, USA - EP_sed
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Wisconsin, Madison
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7294
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (53.85%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hot Spring Sediment → Evening Primrose Hot Spring Microbial Community

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.69934	Long. (^o)	-110.76721	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F099548	Metagenome	103	Y
F101501	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0374090_01333_4948_5295	F099548	AGG	MQSNLPWNVRRVVARLIVIAIKGAPGSCISITPGLLGKVLGDGAVREALRLLRVMSLHGILDRVNGAYTLCSMDNPELWVTVKRLPIDEAVAWLLWLIEDASDGKAIGNGPSYEL
Ga0374090_01333_5982_6452	F101501	N/A	MRGMLNMERIVRENVDVIRSIVKRAFNGEYMGYTNDAIPFIIIKVKDGVIEVPITNTAFKPILEKAYKTLDNYEKRRLLAYEVGGAFKVHPYYIQLLILDAIQLSQLLNIRNADALVRTLLEHPLSSERAGMIGRQGVEWLIKRMIEVGLLNMPSP

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