NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0374090_06479

Scaffold Ga0374090_06479


Overview

Basic Information
Taxon OID3300034404 Open in IMG/M
Scaffold IDGa0374090_06479 Open in IMG/M
Source Dataset NameHot spring sediment microbial community from Evening Primrose, Yellowstone National Park, WY, USA - EP_sed
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1620
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hot Spring Sediment → Evening Primrose Hot Spring Microbial Community

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.69934Long. (o)-110.76721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022018Metagenome / Metatranscriptome216Y
F082274Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0374090_06479_132_605F082274AGGGGGMCVVKGVVKREPKTKQEIFWTDFVRYHVSTDSYLSTSAIEPWQIVLRLRGSLINRPISELNDRLEDYLEAAYSLGEVAGFTEALRLLYELGLAKDYLELPRTSERLQRLAFELYWLTLRIERTKIRRNESLAQKAAKLNYGFYRLFERALKFARARK
Ga0374090_06479_876_1469F022018AGGTGGMGEVDNVVGAVVGSYGIYLRQVAETPWADAMDSIDYLEGFDDLNDSDLIDTLARWAGRSYEDFKGIWDSLSDKEKEKALGEIEYEIAVIGFESLLKGIAADFYVMENKDVRERIINAARKYLNGEIDFYDLAEELENIFWPTEEDKKEYEEALRYFWDGIGLTDYIEENEVKEMVNRYLVNELEAIGKTPDLGEPAP
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