NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0348337_034017

Scaffold Ga0348337_034017


Overview

Basic Information
Taxon OID3300034418 Open in IMG/M
Scaffold IDGa0348337_034017 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2290
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.149325Long. (o)-75.288339Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004438Metagenome / Metatranscriptome438Y
F051153Metagenome / Metatranscriptome144N

Sequences

Protein IDFamilyRBSSequence
Ga0348337_034017_1593_1796F051153N/AMPNAKPTAATVHTELVRHETECAERWRTNFKQLDKLESSMNSMKFWLLGGLTTIVASLFTIIVRGMI
Ga0348337_034017_1882_2151F004438GAGGMRNITFILIGLFATSCATVNSVIEGGKDIAMTTVDTTVNTVGSVSSAALKDVSGVVNTVAETYEGVIDTVVENIDEQTDELQNKPEESK

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