NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0348337_036176

Scaffold Ga0348337_036176


Overview

Basic Information
Taxon OID3300034418 Open in IMG/M
Scaffold IDGa0348337_036176 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2183
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.149325Long. (o)-75.288339Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003678Metagenome / Metatranscriptome474Y
F058963Metagenome / Metatranscriptome134Y
F106095Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0348337_036176_1238_1534F003678N/AMNQFMLYAPLIIAITSLFLCSYACVRVGQFINASKGLDWDAVANITGDLATTKKTIQTLNNRLNGMHSPKLADQELMMQLMQRQPNQQMNGTIKNVGG
Ga0348337_036176_1534_2181F106095GGTGGMSFLSNLIKKAAPVVAAVAPGTPIGTAAQVVAVGQQQQEAKYQKKLAIDAQARRNREMSEFRDTDFLTGSRPTINQSNFGGRTTNAGFGSSFGSFLSDVGSNIINPLSGIFSQVRPFISQQSVGQPALPTRSNLGGQESQQSGTQQAFIGGAGNLLGQAARFLRTPGGQIGTGIVGGIGASLLGSGNGNMRITRKMKSQYRAVLNLAQGDYDQAAS
Ga0348337_036176_2_127F058963N/ARKTKTTVRRLKSMCDMYDSLRPSAARRRTPMRRATTTLIKN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.