NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0373914_0128502

Scaffold Ga0373914_0128502


Overview

Basic Information
Taxon OID3300034419 Open in IMG/M
Scaffold IDGa0373914_0128502 Open in IMG/M
Source Dataset NameUranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B5A4.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)639
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → unclassified Calditrichaceae → Calditrichaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry → Uranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States

Source Dataset Sampling Location
Location NameUSA: Oak Ridge, Tennessee
CoordinatesLat. (o)36.0103Long. (o)-84.2696Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053366Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0373914_0128502_1_639F053366N/AAVVPVLAVSLSCGRKDRATPEQLRSEIAAFEKERETLRGRFNELILNDPRIEGMPTTPVRVGIPTTLARDLIERVVEGFVDQVTLELKNLKVKKSGTVKKVVTLGQYDLHVTIHRVAGKLKTGKPDVMFGGNKVSLALPVTVASGSGNATIHFKWDGKGVAGATCGDLEITQEVSGSVRPDTYPVSGGLELTATAQEILAEPRFPVIKVRLKV
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