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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034628 Open in IMG/M |
| Scaffold ID | Ga0326755_001526 Open in IMG/M |
| Source Dataset Name | Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2961 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2726 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (100.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → Circular genetic element sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | 14.7528 | Long. (o) | -44.9788 | Alt. (m) | Depth (m) | 2961 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012859 | Metagenome | 276 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0326755_001526_677_1270 | F012859 | AGG | MVRNRRGLAPWSLAREAGVESATVDGTIEVPQYVQPTLSTGFVDEKGDWKGSKSDDKDFFAFQTDPGIANGGIILAPSVNPDGTWPLDMTGYSTIQVAIKPSNAGNYEIVAVMGPDSLSYANLNPVDAAAVLKGNGDWYASSDFEILTSEDAESLTADVWNIFTIINRLGNQKLLQFKIENNSGGASDIETAFMRIV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |