NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0326755_002078

Scaffold Ga0326755_002078


Overview

Basic Information
Taxon OID3300034628 Open in IMG/M
Scaffold IDGa0326755_002078 Open in IMG/M
Source Dataset NameSeawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2961
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2184
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)14.7528Long. (o)-44.9788Alt. (m)Depth (m)2961
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012859Metagenome276Y
F090253Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0326755_002078_206_505F090253GAGMVARRRKPRRSRAKKTFSIPLIETGAGLALIAQSDVGTHVKTMLGGNLQGGLDGLNKSIMTNKNLMIKTLASAFIAKQVVRGFGGSKILARIGPVVARA
Ga0326755_002078_928_1512F012859AGGMVRNRRGLAPWSLAREAGIESATVDGTIEVPQYVQPTIDTGFVDEKGDWKGVKSSDKHFIAFQTDEAIANGAEFIAPSANPDGTWPLDMAGYSSVFIAVKPTNGGNYAMSATMGTGSFANLKPVNAGTTLRGLHAPQEKSCDELFVDSAETMTVDVWNIFFIANVLSNQKLLQIKFVNNSGDISTIETAFMRIV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.