NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326755_005744

Scaffold Ga0326755_005744


Overview

Basic Information
Taxon OID3300034628 Open in IMG/M
Scaffold IDGa0326755_005744 Open in IMG/M
Source Dataset NameSeawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2961
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1175
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)14.7528Long. (o)-44.9788Alt. (m)Depth (m)2961
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003617Metagenome / Metatranscriptome477Y
F013646Metagenome / Metatranscriptome269N
F043153Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0326755_005744_561_782F043153N/AMPHFTGEIQPSNVKAQAVYDIASYGTDLFLPLTDVGLTETALTFSGVTMTRDTSDSNQPLDSFPRVYSDTITQ
Ga0326755_005744_62_589F003617N/AVFILTLLLNEGNDTAFNQTYTLDPDMTAIIYKLSLNLCAVLTCSAYTNGGLNIGGLHIKISERSSNDRLLYENTFQSGAATLSATGTSMHWFTQDIVETIKVRKGNPIDIQLNLITVVTGTNTRQEGYAPVAPLLKTAVMKSFYETGISLHLHPDLSHADGVFKYKKERVSLLGQ
Ga0326755_005744_795_1175F013646N/AGSTTINTRTQQADDITITGGNEITGLYTVVSGAVATASEHDSGFSEFVSPDFNTSMPYRVAIQPTFTGLGAAANAVTGGGGIMQYNMPRGQGIPLADKVTITTYYTNRDARAGGASNFINFVRYTK
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