NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370545_015579

Scaffold Ga0370545_015579


Overview

Basic Information
Taxon OID3300034643 Open in IMG/M
Scaffold IDGa0370545_015579 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1216
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014162Metagenome / Metatranscriptome265N
F020561Metagenome / Metatranscriptome223N

Sequences

Protein IDFamilyRBSSequence
Ga0370545_015579_233_418F020561AGGGGGMTRELYVYDHASGMIALLFVSPNGTVEAFDVEGFSRIGEFASVAEAAAFACADVQMPRLD
Ga0370545_015579_742_1200F014162N/AMLQQITPSRGRRTTKFTPANIQKIKDWVAQGTRREDIAKSLDVTVGSLQVTCSRLGISLRRRDNAPRGRAFVSNGRVYAGHLQPAPKSRAKFQLVLKSQGNERTTDLLFTANGIGRLGVEASAQGLGLTDLMSQVLTQALKKGLIQKILDKK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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