NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370545_051877

Scaffold Ga0370545_051877


Overview

Basic Information
Taxon OID3300034643 Open in IMG/M
Scaffold IDGa0370545_051877 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)800
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048650Metagenome / Metatranscriptome148Y
F061314Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0370545_051877_3_581F061314N/APNGAAPAETIQKTASEILDEVKAMTREWETILEVIPSGKSIFRIADLPADHSGPITVPNVGWRVLSKLDGFRSVQDIAELLRIPFAYAAKVIYSLHKAGLVEAAAPVAKAVVDLVPAALLSRVTSILTEVMGPMAPLVLRDQIEALGESPNSLPESKLDELIVLIGREITDSKIKNKFEESMFQEISNFKRF
Ga0370545_051877_636_800F048650AGGAMESSKLAKAVNIDWQRGGLRWKISATFSGLILVLGLLVIGIVYYFTSTALQKQVD
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