NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0372965_027036

Scaffold Ga0372965_027036


Overview

Basic Information
Taxon OID3300034646 Open in IMG/M
Scaffold IDGa0372965_027036 Open in IMG/M
Source Dataset NameMetatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_0000_MSt4 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)829
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006252Metagenome / Metatranscriptome377Y
F019420Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0372965_027036_171_407F019420AGGGGGMATYRDVIFWSSATDGDCKVTVIRARLLGMTIDLGDDDERPDKMTAFYEADGGGIIVYEVESWEADGRMTARWRRVAE
Ga0372965_027036_404_829F006252GGCGGMRSFDEQAAFGLPYEHLIAQTAALLLYPHRLDLALVRLDAYAPLDFLIVDGERPVAALEVKRRSVRSDTYPTTIIPQTVVDAAKRLPIPVFAAILFLDGLAVFDVLRTPSGVRWLRTRRGALRKHREYDISERLVKVEEVHQ
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