NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0372970_007743

Scaffold Ga0372970_007743


Overview

Basic Information
Taxon OID3300034648 Open in IMG/M
Scaffold IDGa0372970_007743 Open in IMG/M
Source Dataset NameMetatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_1000_MSt9 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2159
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F008135Metagenome / Metatranscriptome338Y
F098761Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0372970_007743_1125_1355F008135AGGAGMNDPRTERVLTEAGAGIARVLDDCQRRAVALAIEACWYIVAALPPDGSVTFGDVVWLLRWFARGFNEGVEVDDGDE
Ga0372970_007743_1374_1715F002229N/AMEADMVTLLTFDGVEDVDYTPSDAEIRVALDDRALYGMVLNGVTWMRLSSGAGWWTVICNRRVTATLAAVGWCWVADGLGARGYWSPALACIPGEVRALCGGCVRDDDGDDEE
Ga0372970_007743_1773_2102F098761GAGGMILWGKRGVVCIYTSPAFQTVDVRLRRLTQYVYVTAGRFRRSGADYAVYRWHEHPYADDVLVERYRFGLRLDTWYGIYDTLYGAAAGDTLAILPAPAPAPALAPARRRG
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Institute for Fundamental Biomedical Research
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