NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0372970_008430

Scaffold Ga0372970_008430


Overview

Basic Information
Taxon OID3300034648 Open in IMG/M
Scaffold IDGa0372970_008430 Open in IMG/M
Source Dataset NameMetatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_1000_MSt9 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2046
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F075805Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0372970_008430_1101_1457F075805AGGAGGMWVKVWHGWRGVHNGKDISRWEWIEFDGEPLGSLVVEIDEDRTDERVFYRLYDGRIVVAEHRYGDWEKGGVDYGVVSVYADLDDAARRGWRDDLVRIGAYDAPTLELDEWLSQYEEEE
Ga0372970_008430_769_1104F002982GAGGMKIAFERTPTAICAVLTEPGECDRIINVARASDAFRAFGIFTRDVAPAAYKPLDALFSLPRVVCVEIERREGGWRVEVAYWNGALGTLAQYETDAATLSEALARCVWALAR
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