NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0372972_005359

Scaffold Ga0372972_005359


Overview

Basic Information
Taxon OID3300034649 Open in IMG/M
Scaffold IDGa0372972_005359 Open in IMG/M
Source Dataset NameMetatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_1400_MSt11 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2589
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F009403Metagenome / Metatranscriptome318Y

Sequences

Protein IDFamilyRBSSequence
Ga0372972_005359_160_513F000855GAGGMDWLEDAISKIVGWLDQISAAVHNAIIGWINGLIDIWNGWMDSLLHPAQAMPSIPALRWVVDWLGGIADYTRLMYMLVDYVAYAWIVQQALTAQIGIVIVGLGFRAWLVIRRIVLVS
Ga0372972_005359_1763_2068F009403AGGVFRITRHGRGSGRAPALSVIRSADGARLEVREGRYGQGACYAYCDVDDTLAAHTLLLTFADMRARDIYIHTDIPVISERKFFDAFGSGSVLPDSLPDPLRA
Ga0372972_005359_2_160F001381GAGMRYVIATLYVLVWLALAALAALVLPIWALPAALVQLSVAYVMLRSWLTAAGGD
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