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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034654 Open in IMG/M |
| Scaffold ID | Ga0326741_002040 Open in IMG/M |
| Source Dataset Name | Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4411 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | 13.5136 | Long. (o) | -44.9628 | Alt. (m) | Depth (m) | 2244 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001606 | Metagenome | 664 | N |
| F001712 | Metagenome / Metatranscriptome | 648 | Y |
| F004658 | Metagenome | 429 | Y |
| F043153 | Metagenome | 157 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0326741_002040_2944_3300 | F001712 | N/A | MSASAGQPIGARAQNFGNSLLGRISGYTPFKNAPGANTPQTIGIDGIFNKWSGIGLGSFVYGMLPVKMLPHKGKAKTLGKSLLTAGILSGIFMPTNTHSNLISPSRAITVSSSEVSYT |
| Ga0326741_002040_3297_4124 | F001606 | GAGG | MTYGYDDVTFTSIGTGVTETQLNSGTSLSAPDPAHGFNAVVPYQMELGAFTPDESLLTAFRIQSDDVAVEPKKFVLPNVNTGDAAFASVQAPALLAYPINTPLAGGEHLNFYAQPLVANTVAPGCGATVIYNTSGTNGDEQYYTRPTNETAAGTAINTRTTGGDMTIQGGNEITALYTVVSGATATASQHDVGYSEFVSPDFNTSMPYRVAVQPTATGLGAAAGAATGGGGIMQYNMPRGQGIPLANNVTITNYYTNRDLRTGASNFINFVRYTK |
| Ga0326741_002040_4138_4410 | F043153 | AGGTGG | MPHVNGEIQPSQVKSLAVYDVGSYGEDLFLPLTDVGLTETALTFSTATVTRDTSNSNQPVDTYPRVFSDTDSGLLLNEGNNTIYNQTYTLD |
| Ga0326741_002040_831_974 | F004658 | AGGA | MPEYLKKVYEFFKTNNTAKDVLIGSVSFIAGGFVLDRILRRDEDEDE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |