NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326741_004165

Scaffold Ga0326741_004165


Overview

Basic Information
Taxon OID3300034654 Open in IMG/M
Scaffold IDGa0326741_004165 Open in IMG/M
Source Dataset NameSeawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2973
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)13.5136Long. (o)-44.9628Alt. (m)Depth (m)2244
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004908Metagenome / Metatranscriptome419Y
F029465Metagenome188Y
F099123Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0326741_004165_1544_1759F029465AGGAGMSLYERLVKEKDRLGKKALRFPKTDKELLDRKRWERIYEILTRRYEYGIEDAMDSYKRQDQFDEIATIKIP
Ga0326741_004165_1_168F099123GGAMDKYEINVWKDAELLSKEIVQFGSNEDCYNYVMEKHYAPGTWTGSHQNKAGVTSSP
Ga0326741_004165_441_827F004908AGGAMATLKIIDLHQVEDGAINPKTGLMEKPSWYVRFEDMSDRVLFKSRLLELLSMGFRKTVENFKAGKATTSVGGDARFWVVVFQDYEVRLQTKSQIMEVVTEGHRHRDDEDNAKFERNGNGTNEEHFTIE
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