Scaffold Ga0326741_009550

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326741_009550

Scaffold Ga0326741_009550

Overview

Basic Information
Taxon OID	3300034654 Open in IMG/M
Scaffold ID	Ga0326741_009550 Open in IMG/M
Source Dataset Name	Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1843
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	Atlantic Ocean
Coordinates	Lat. (^o)	13.5136	Long. (^o)	-44.9628	Alt. (m)		Depth (m)	2244
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005551	Metagenome	397	Y
F005580	Metagenome	396	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326741_009550_1311_1685	F005551	N/A	MTLAASKSVSRAKGGNIYGWSGSKALSASAVTLLDYTNPSAFYLTRITLGVDWSGISATEFISYTINVDGVALFVEKTIITADNLGTQPKMFEFMIPPNSTVKVQALQSDSNGFITCILTGYRV
Ga0326741_009550_198_515	F005580	AGGAG	MKAIPHPSVTGMASGLAIAAYLNSGKTVTGSFGKTSIVEGVIKDVTDGQLGTAFSTLSSNAVDMIGTDAGRKTLVTASLVAMLGAFARSRFPQLKLGGSKLYFRI

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