NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326741_010930

Scaffold Ga0326741_010930


Overview

Basic Information
Taxon OID3300034654 Open in IMG/M
Scaffold IDGa0326741_010930 Open in IMG/M
Source Dataset NameSeawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1702
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)13.5136Long. (o)-44.9628Alt. (m)Depth (m)2244
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010725Metagenome300Y
F016735Metagenome245Y

Sequences

Protein IDFamilyRBSSequence
Ga0326741_010930_1493_1702F010725N/ADGVSVQQIFAGPSWSNQAAGPLDGNSGMPVVIENASGIFDIIAGNQIDFSVSCTTAETVDVAVSITYSA
Ga0326741_010930_1_384F016735GGAMTDEIFALVWVLSFGLYLVIYTYWIPLRTQKKIESWLISEESNETLLASLGVITNQIREQALVDFEEFMIPQGRKAAIDFWNGAMGNAAQKLSGTEEGSQLSLLHSMTEELKDQPWYVQAAASKLIPV
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