NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326741_087359

Scaffold Ga0326741_087359


Overview

Basic Information
Taxon OID3300034654 Open in IMG/M
Scaffold IDGa0326741_087359 Open in IMG/M
Source Dataset NameSeawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)511
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)13.5136Long. (o)-44.9628Alt. (m)Depth (m)2244
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012859Metagenome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0326741_087359_3_449F012859GAGVDGTIEVPQSVQPVLDTGFVDEDGNWKGTKSSDKDFIALQTDEAIANAGTFLTPGVNPDGTWPLDMTGYADIFIAIKPSNGGNYQITAVMGPDSVPFANLSPVNAAATLKGAIRRNDMDNLLHDSSDSLTADVWNIFIIKSQLSDQRLL

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