NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314782_041354

Scaffold Ga0314782_041354


Overview

Basic Information
Taxon OID3300034661 Open in IMG/M
Scaffold IDGa0314782_041354 Open in IMG/M
Source Dataset NameMetatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R3 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)885
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021280Metagenome / Metatranscriptome219Y
F053954Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0314782_041354_2_526F021280GGAGGMKVSASLTPGDQLPVLLERIERREKSARIRGVLYALLPVALTVVLLSYAQSSVRNAQKQVDDLKAEASTFTTQIDTLKKNTESYKTQSESMQGNAENYKTQVTELQAQLAETQKSLSEAVNLSRAIRTIDYANAKELASRFPGSESLLLDILDLGRRRIKWKPGGQSVQEGLDSP
Ga0314782_041354_528_776F053954GGAMVLLSFVSPGLIFPETLKTVQTLGGIVFAASGLIPIFFSRPDNYVAVRSLLNSYQHQQVGGLSPDPKLDQYFDQYFDMVLGG
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