NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315300_012812

Scaffold Ga0315300_012812


Overview

Basic Information
Taxon OID3300034679 Open in IMG/M
Scaffold IDGa0315300_012812 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB21_1000m_1099 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1562
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.0136Long. (o)-139.5971Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053723Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0315300_012812_1_1356F053723GGAVTQGEAESIYNAAGAPTVEDMLNTAVNQISFIANVNVNQSTGWWQPGVNNTGGCGQDQTFELPFGYDGTNKSTEEASLPGFHDNLKKLHDAGMTLTLTMGSWCTQLPINKSQEWTDDEFSGFVDYFKAVREKIFGGYLDGIDFDWEGYCDAGCLKGTCICAWNDKICGTVTPEELAAGVFWDAPPVPGQKPMKHQCWIMPTTSTFQVMSGITHAMKREGFVVTLVPMSTSMYSGEADTSPKQVMRNEYVKYRMQTSFGQKVDLLDMADGILLQWYSGFDAALCVNTDVSSKACTCDNIPADDYPNVLDTTKDAGGLLVSYWQTYWNISGNFFPSTFPIRCQACGKNVILPDGTRGDVPCASEEETWYVPSMNRTDKGANPAAVVSEHNTKMEAYTQKNQHIPRWWIKGMEINSKCPRGIDCPDWRYKGEEPYSRQIKLLKSISKVVDLSKVS
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