NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334905_001144

Scaffold Ga0334905_001144


Overview

Basic Information
Taxon OID3300034687 Open in IMG/M
Scaffold IDGa0334905_001144 Open in IMG/M
Source Dataset NameSoil microbial communities from Mojave Desert, California, United States - 1NOC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3889
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011201Metagenome / Metatranscriptome293Y

Sequences

Protein IDFamilyRBSSequence
Ga0334905_001144_223_573F011201N/AMKKSKAKSKMGHGGARPGAGRLPLWKHRPLKMVRLPLAFVEEILKVAHYMDQNEGRLPFSEASEDLGIISGHPSKSLSGEEIKELAAREKARKLADRVMVGDEWVLVSDETFRNQH
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