NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334905_068755

Scaffold Ga0334905_068755


Overview

Basic Information
Taxon OID3300034687 Open in IMG/M
Scaffold IDGa0334905_068755 Open in IMG/M
Source Dataset NameSoil microbial communities from Mojave Desert, California, United States - 1NOC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)547
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002196Metagenome / Metatranscriptome584Y
F003251Metagenome / Metatranscriptome497Y

Sequences

Protein IDFamilyRBSSequence
Ga0334905_068755_250_432F003251GGAMQTKTYTTETEAKKAAARAYRPAIVRLPNGRYACIQAGDTLPQGARAVSRWGTNRWRAYG
Ga0334905_068755_3_236F002196AGGAGMYRTVEDGRALLKAAQEIHAERHGAQTFTRGTHLPLAAAGERIGLSPRRLRYYDALQELEYEGAIERDESARYAGGDM

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