NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0372840_025229

Scaffold Ga0372840_025229


Overview

Basic Information
Taxon OID3300034695 Open in IMG/M
Scaffold IDGa0372840_025229 Open in IMG/M
Source Dataset NameSeawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2012_500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1696
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NamePacific Ocean: Gulf of Alaska
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001930Metagenome615Y
F006919Metagenome362Y

Sequences

Protein IDFamilyRBSSequence
Ga0372840_025229_2_883F001930N/AASEKIFEFQQIQYMQIPLTSSTMSWIFKVQLPRATVFHVTNGIGLDKLKKLQNRKKSISAFFNMDAGTMEHGIQGGGGLVVELDANIIMSSKGDLMSMPDKTGRRWVELMNIDKKKTMHKELEKMLIDIAIKHDPKTKELIKIEPDIGLGAWWHLQGAFKDNKKVMSLIIADYIDGVNEILKKHKNDIQGAVHGYYVRRGTVAVKHPSGRMVGGDSELSEWNVYDEQVVDEIKIIKVHTFNTKTRETDWIKKEVVPRLGKIPHTHWVNGARELSTYVTKIAQTEVQALRRSKG
Ga0372840_025229_940_1695F006919N/AVFDVASQGRASSALKIPISGPMFKRIWPDTIRTTVFHVLRAENLYELKKLEGGKRSISAFFTMMSRYLEGGIAAGGGVVAELEADVIVSARDDIMSTVDTAGRRWVEMSWFANAQRGGTGPKFAVVERELNDLIRELVLKHLSPILGKDRVRREFEFELWNDMKKHLSGDGKALRLVIKDYFDGVEKIIKKNSEVMSSIFYGYAKSKRQTDSSWDEQIVNNIKIKKIHYIPIKVDNEEEDGNIENEEQQENT

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