NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370516_000543

Scaffold Ga0370516_000543


Overview

Basic Information
Taxon OID3300034696 Open in IMG/M
Scaffold IDGa0370516_000543 Open in IMG/M
Source Dataset NameHot spring water microbial communities from Yellowstone National Park, WY, United States - YNP_Buffalopool_103118
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19104
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (50.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Water → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5324Long. (o)-110.7974Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009254Metagenome / Metatranscriptome320N
F011084Metagenome / Metatranscriptome295Y
F013065Metagenome / Metatranscriptome274N
F020182Metagenome / Metatranscriptome225N
F036248Metagenome / Metatranscriptome170Y
F096802Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0370516_000543_10702_10830F096802GGCGGMALCVRYLHRHPLELSHLPAAALADLIALANAEADAYAEALP
Ga0370516_000543_18532_18726F020182AGGAMLLARECVVTVYARRVLRVELQGRVQLLAPWESAASLTHKLHALFGIPAPAEPCRECPDRGFPS
Ga0370516_000543_4652_5179F036248AGGAGGMVKLFSIDEIRDMMGSVEPIEGCLVVEVNLQPMQVAFTTEKPAEDMKYFQYEGEYDPRACIPLFAQSPVYGVFLGPVQGGIPLAILSPVRGAKFGVASFRGGEHKFNLIINDPAAIAFLREKGVVRLGDRVVVAFAYDPKKVEWAKAHGGKFFSELKAWVFPAECEEKVKEVLLG
Ga0370516_000543_5176_5628F011084AGGAGGMTHHGDTIVADEIVRGGRRDYVPAENWRELEENWRELEPAARKCLQSRGVPVSEAGNFDCPEQLAERAKFGFELFWAQSDLPLGAALAAWRRQVLGASDYASFALQHGVAQRVVQLLERHNRIPLRADARRRLERAYRLPHGFFDGLVDE
Ga0370516_000543_9444_9818F009254N/AVRLEIAEAHLRNFLARVVGVPIVSVPTELPAGSAVAGVLSLQSREAGKAIGGIRAVYQLEVLASDAIPDAERRRLYETLASHIIRTELAAERDWLPMLDYQVFLEELNSERLRVRLEVEWNADE
Ga0370516_000543_9853_10275F013065N/AMARRIARDAAIAIQLGGVDDGSPITWGAATQIEGKCSEISIDYRSQTVNLAGLSDAYARMRSAGAAEYTIRIRAFIPSDSFDFYVSGNPPLHHRARVRIKPRSTLATDAEYTGVITRWSWSAQAGQEQIEEIEIVGPLDV
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