NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370516_000988

Scaffold Ga0370516_000988


Overview

Basic Information
Taxon OID3300034696 Open in IMG/M
Scaffold IDGa0370516_000988 Open in IMG/M
Source Dataset NameHot spring water microbial communities from Yellowstone National Park, WY, United States - YNP_Buffalopool_103118
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13895
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Water → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5324Long. (o)-110.7974Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036248Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0370516_000988_11212_11817F036248N/AMWYNDYDYNQPVSPHPDRGRRGEEEDRTVMVKLFSVEEIHNMMGATEPIEGCVIVEVNLQLTQVAFTTEQPPAEWKYFEYEYDPRDTACIPLFVHPVYGVFLGPVRGGIPLAILSTARGAKFGVASFRGGENRFNLLVHEAARAIFQNRCVRLGDRVVVAFPYDPNKVARAKALGGKFFADLKAWVFPAEREAEVKGALLQ
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