NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370516_012162

Scaffold Ga0370516_012162


Overview

Basic Information
Taxon OID3300034696 Open in IMG/M
Scaffold IDGa0370516_012162 Open in IMG/M
Source Dataset NameHot spring water microbial communities from Yellowstone National Park, WY, United States - YNP_Buffalopool_103118
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3444
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Water → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5324Long. (o)-110.7974Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069506Metagenome124N
F086364Metagenome111N
F100012Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0370516_012162_1197_1598F086364AGGAGGMEREKIIAALETAFAEISGAKYEDEPETFAEFLESFKKFRDPETPVYWIPWTVEEAVEELTGRKFGWHEDAFKDEWNYTGEFGFICVDPETLRCLTAERTDDERCAVSVVFPILSIDDAVQAVEYFLRLAQQA
Ga0370516_012162_239_649F100012AGGAGGMDREKVLQALREVQAEYDIKSLDRLVREAWEEGDVLYAEIVVELIERAVEILFNQRFLWVHIVESEDCEEWIPDGWYSFVAVHPETGQCLTFLNDPVHRCKSASFRARIRSADDAVDAVMRLAELIEQNLKSRAVE
Ga0370516_012162_658_1116F069506GAGMEVMSMQLEQQTFTDEQIKQAIEEVWQELLQEADAEDYSLEEYLEHYRKYWDEPDFPNDIPVIIMRAVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPRTQKCLTYREYTSDGVNVHRFIHVAGTVVYYEDIVRLVIKLLDQIQSALADA
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