NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334948_001968

Scaffold Ga0334948_001968


Overview

Basic Information
Taxon OID3300034760 Open in IMG/M
Scaffold IDGa0334948_001968 Open in IMG/M
Source Dataset NameSub-biocrust soil microbial communities from Mojave Desert, California, United States - 44SMS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7325
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004903Metagenome / Metatranscriptome419Y
F006090Metagenome382Y

Sequences

Protein IDFamilyRBSSequence
Ga0334948_001968_2229_2444F004903N/AMARYLQKISLRPYSESEIWTGWDLEGRNGEVEGLVLAEGMSPDELAAKYGVTEFQKIPSEYLDAGEFRPKR
Ga0334948_001968_3970_4602F006090GGAMSLLAEQKVPTASPKLEGKEVLVGHDPAVAKVKGVMFGGRRQFLLDTLGAAGFNAFLEKLTPRTKGYTRTPLASSWCEFESLIELDRAIHNELKAKHPNVLALIGAASAELGIGRIYRSLDSEELVKFFEDTALFHDQYQKFGTVHFEKTPNGGRMIYSSYPVHSPVFCASAIGYFMETMLRHGAKEPKVVETKCQCHGDKTCTFELTWR
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