Scaffold Ga0326773_033596

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326773_033596

Scaffold Ga0326773_033596

Overview

Basic Information
Taxon OID	3300034772 Open in IMG/M
Scaffold ID	Ga0326773_033596 Open in IMG/M
Source Dataset Name	Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S84 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	588
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	36.0	Long. (^o)	-78.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001429	Metagenome / Metatranscriptome	696	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326773_033596_3_569	F001429	N/A	LDKIVLCSYDIIPENIRFHLESDSEVSFRDVEVKETQTYLVIELNRLLTELKDVEFYYKKKTFPELEDSGRVTFRVKGQGANLRLTYNVVQKPEDKVPRIMEGTASFDISDLDIIFDTSTLKHDVLVPMLTNMFKLQIKQQIEYQVENNLKGFMKNLGDMITNSIGQTNRPFLSGLEQARKAVKSSQFG

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