NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS053214_LANL_scaffold_2022

Scaffold SRS053214_LANL_scaffold_2022


Overview

Basic Information
Taxon OID7000000011 Open in IMG/M
Scaffold IDSRS053214_LANL_scaffold_2022 Open in IMG/M
Source Dataset NameHuman stool microbial communities from NIH, USA - visit 2 of subject 159753524
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5399
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071325Metagenome122N

Sequences

Protein IDFamilyRBSSequence
SRS053214_LANL_scaffold_2022__gene_5375F071325N/AYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFSKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATVYL

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