NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS013170_Baylor_scaffold_57927

Scaffold SRS013170_Baylor_scaffold_57927


Overview

Basic Information
Taxon OID7000000044 Open in IMG/M
Scaffold IDSRS013170_Baylor_scaffold_57927 Open in IMG/M
Source Dataset NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 159369152
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16762
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (26.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070224Metagenome123N

Sequences

Protein IDFamilyRBSSequence
SRS013170_Baylor_scaffold_57927__gene_66378F070224N/AMKRLLFLLLTLLHCTAWSQVYNAPDSIYVASGAVYIPPISGESIYLLASPLKSGHTPGSKIRTRDWVKVDYSDRNNIIVRKVGGSLIIENLFIYYAAGFPGMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRSSGEVDRWQHPHLFVVEHDKKAGRYYKYRIALVIYMDYNHPEACIIH
SRS013170_Baylor_scaffold_57927__gene_66379F070224GAGMKRLLFLLLTLLHCTAWSQVYNAPDSIYVASGAVYIPPISGEPIYLLASPLRPVKTRGSKIRTRDWVKADYSNQNNLIIFGFGDSLVLENRFAYYAAGFPEMKEYELYYKGTGEEITKEDFDSIKFTRMPTALRELKKYKLPRTRRSSGEVDRWQHPHLFVIEHDKKAGRYYKYRIALVIYMDYDHPEACIIH
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