Scaffold SRS055401_LANL_scaffold_9796

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold SRS055401_LANL_scaffold_9796

Scaffold SRS055401_LANL_scaffold_9796

Overview

Basic Information
Taxon OID	7000000048 Open in IMG/M
Scaffold ID	SRS055401_LANL_scaffold_9796 Open in IMG/M
Source Dataset Name	Human supragingival plaque microbial communities from NIH, USA - visit number 1 of subject 675950834
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8320
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F043991	Metagenome	155	N
F051214	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
SRS055401_LANL_scaffold_9796__gene_8246	F043991	GAG	VSKKNPSVIDYFDLNGDLNEEAYEFEDVKLDEYIDKRSNVKPSWIGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGSPSNVHPDFRA
SRS055401_LANL_scaffold_9796__gene_8247	F051214	AGGAG	MPGKIVANDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYVYNNREYQIACEFLRQVMHDKIDLKDEWI
SRS055401_LANL_scaffold_9796__gene_8249	F018385	GGAG	MADLINSWLPYQELSIDKDRDPVTDDEIIYGSNVKHFTLTVYSPEGRVNKYWNARILKDQVGYCRVACPREKKILCFNWVNWTAYMFTHDGLNELVFMPDARRRTVSQLSFDHVPMKEVK

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.