Scaffold SRS021960_Baylor_scaffold_7349

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SRS021960_Baylor_scaffold_7349

Scaffold SRS021960_Baylor_scaffold_7349

Overview

Basic Information
Taxon OID	7000000084 Open in IMG/M
Scaffold ID	SRS021960_Baylor_scaffold_7349 Open in IMG/M
Source Dataset Name	Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 158256496
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1893
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F043991	Metagenome	155	N
F051214	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
SRS021960_Baylor_scaffold_7349__gene_5712	F051214	AGGAG	MPGKIVPHETHLRIDTEFIELKDCFEAFRRGVEYREKNDFEDILVICNTTDLIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDIAVKPIYIYNNREYQIACEFLRQIMHDKIDLKKEWL
SRS021960_Baylor_scaffold_7349__gene_5713	F043991	AGGAG	MSKKNPSVIDYFDLNGDLIEESEEFAGIKLDDYIDKRSKVQPTWMGRYSQQMHFDLESGTEVSFYAHSGLVYADILYAEGIRTILFKCRQRKNLTRFISRVLELANGEPKNIHPDFRA
SRS021960_Baylor_scaffold_7349__gene_5716	F027205	AGGA	VASRLIVTADDIMKAVKESEEFERRALVEARKRDRADGKTPRDVLHPDRKPGREIVLDYIKNPDRRRTPRCSIHLERRTENNSYRFTVDVSQVRNRDLADEIEKDLFVFMDYLLDEYDIP

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