Scaffold SRS018145_Baylor_scaffold_50013

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SRS018145_Baylor_scaffold_50013

Scaffold SRS018145_Baylor_scaffold_50013

Overview

Basic Information
Taxon OID	7000000085 Open in IMG/M
Scaffold ID	SRS018145_Baylor_scaffold_50013 Open in IMG/M
Source Dataset Name	Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160158126
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13619
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F105378	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
SRS018145_Baylor_scaffold_50013__gene_77338	F105378	AGG	MKVLVYVDEIKKWVQISSDEILDVTKNLSDLKDKDAAISNLGLYDKFISKEALESGFLPDVFTPDNIITDSKHQFATDEEKNNWNNKLNNPIPMQDKLVNNQIGYDSANSKFYIGINNQNVLLGGSSAFDNIKIVDGFFSGNSQPTVIRNNKFNSEGQLIMPLFVDVQCVEYTAGDLGEISISYTSDTIKIYNTGSFTGAFQCLIVYPLGSINE

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