NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS022609_Baylor_scaffold_90780

Scaffold SRS022609_Baylor_scaffold_90780


Overview

Basic Information
Taxon OID7000000187 Open in IMG/M
Scaffold IDSRS022609_Baylor_scaffold_90780 Open in IMG/M
Source Dataset NameHuman stool microbial communities from the National Institute of Health, USA - subject 158499257, visit 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4995
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082714Metagenome113N

Sequences

Protein IDFamilyRBSSequence
SRS022609_Baylor_scaffold_90780__gene_172476F082714AGGAMVVGIRFAADAPVRTVLQAVLLIFSTADVDFLVREYWVCTFGNGLPERRFTAQEMQRALDALTPDEHAELFTIYALPHNAPGTPPSSCEDFCARGFTMAFYAYDGDGYALLAQSEEQVEAVIETLQKAVEIRSVEAVECETLARWHF

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