Scaffold SRS024017_Baylor_scaffold_13161

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold SRS024017_Baylor_scaffold_13161

Scaffold SRS024017_Baylor_scaffold_13161

Overview

Basic Information
Taxon OID	7000000211 Open in IMG/M
Scaffold ID	SRS024017_Baylor_scaffold_13161 Open in IMG/M
Source Dataset Name	Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159247771
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2909
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F105377	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
SRS024017_Baylor_scaffold_13161__gene_12457	F105377	GAGG	VRDFDKLPLLTPEEAFERAWEEGGSDHPVFDRGYRVRGLNSWKAIETLLQQNDVRDIAVASFGLKRFEEILDAIDMLHERGWRLWQTSANVYVDGEKRPVQAIRARYRGI

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.