Scaffold SRS024561_LANL_scaffold_40733

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SRS024561_LANL_scaffold_40733

Scaffold SRS024561_LANL_scaffold_40733

Overview

Basic Information
Taxon OID	7000000514 Open in IMG/M
Scaffold ID	SRS024561_LANL_scaffold_40733 Open in IMG/M
Source Dataset Name	Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159591683
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	42626
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	44 (83.02%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F049707	Metagenome	146	N
F095632	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
SRS024561_LANL_scaffold_40733__gene_54060	F095632	N/A	MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGLGSSVLGTYVGDKAGRQYAETLAETIDSLQTPQNN
SRS024561_LANL_scaffold_40733__gene_54078	F049707	AGGAG	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWTVWYFRLVDGGVMTFSSREWDQKDDVNHLTTIWMRPSLYDIERKTS

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