NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS049959_WUGC_scaffold_60167

Scaffold SRS049959_WUGC_scaffold_60167


Overview

Basic Information
Taxon OID7000000531 Open in IMG/M
Scaffold IDSRS049959_WUGC_scaffold_60167 Open in IMG/M
Source Dataset NameHuman stool microbial communities from NIH, USA - visit 1, subject 765701615
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8539
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059982Metagenome133N

Sequences

Protein IDFamilyRBSSequence
SRS049959_WUGC_scaffold_60167__gene_128782F059982GGAGGMTMRRMTRLLCLMLLFSLITFSCPLAEGTDAPTGTPASTPMLTAVPESALAPFNVVLPEDAHVEMAEGRITLVRGDSRVVAMVISRVPDDDPAAALPILMQDFDPKTSETMDFDAQPGFCILGGVVNDAFDDGEDKITLMVLADSGELLILSGYNLARDHHALYLFLTELLENASMDGAAVYVAEEAAATASPEV

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