NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS057205_LANL_scaffold_56925

Scaffold SRS057205_LANL_scaffold_56925


Overview

Basic Information
Taxon OID7000000556 Open in IMG/M
Scaffold IDSRS057205_LANL_scaffold_56925 Open in IMG/M
Source Dataset NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 764224817
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2154
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080166Metagenome115N
F081455Metagenome114N

Sequences

Protein IDFamilyRBSSequence
SRS057205_LANL_scaffold_56925__gene_76910F080166N/AVNILANFENYTKVVEQIFELNYQLTLKMEVTFNNIIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCTIIDEAIDICDPNNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLEDRFGDRLDLMPFVLIDDYNGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGSMARYMAITPLLGNNRQNMMR
SRS057205_LANL_scaffold_56925__gene_76911F081455AGGAGMEITNTENKNLFQQLSSLGFDVNESLLELEKDYSPVEEIGMQNVEIIDSAEEAIQQPLANTDSSIAVNFSQMINKPETEEVKTELVSTPDNGEAKVNVVFPKNEHILSNYVDYDSFNKIKESNAETVVRAVRLLNYKMADQNAAMKFGQFVSEFNSECDPNKRLRYELIRHQGREKDLVVRLSTVVNGTTKYYADIYPDLNKIDIDHHLISSARK
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