NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold C3343923

Scaffold C3343923


Overview

Basic Information
Taxon OID7000000583 Open in IMG/M
Scaffold IDC3343923 Open in IMG/M
Source Dataset NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 160643649
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)772
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055792Metagenome138N

Sequences

Protein IDFamilyRBSSequence
C3343923__gene_134846F055792GAGGVEIASEALDSTSAVAHRILLLTTQLGESLLASLGTEDGVIAEAMVTGALERDLAIDCTLEEVRPVFVDESDDGAEAGTTWRRYPLETLQKEGYILFEGRMLPCEACGVDSRSSVKSLDLEPRIIGKAIEAVALPDVACLDESISLQGIGGLRDLLVTPDVSETDHLQTSREEGTDLLQLMGIIARKYQLFHTFVS
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