Scaffold C2798471

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold C2798471

Scaffold C2798471

Overview

Basic Information
Taxon OID	7000000641 Open in IMG/M
Scaffold ID	C2798471 Open in IMG/M
Source Dataset Name	Human stool microbial communities from NIH, USA - visit 1, subject 160178356
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2245
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	National Institutes of Health, USA
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F068856	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
C2798471__gene_146806	F068856	N/A	VKDSGASAEGNVLAAAHAVLGKERKGMKRLTSILLALLMLVGMALAEEKSDPILGDWYALNTENEAICLTLREDSTFCYDSREGTWRKTTDGEYWLTYNIHDLPEVMERMVNSQAAEQDLTALLTETGLDVYYGSTAKGVVAHMVRDAEELQNVRTPKTDTPLEAFAGTWTMETVFAGAMEMTYTLDKGERLAFCTIDGLTMLPGAALGNFTEGTSYPMTLEDGKLHTTLTLLADAEGDFSLTFFQTEDSSMYANLEYNNGKNALKTMFLLVPMK

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